Package: TCIApathfinder 1.0.7

TCIApathfinder: Client for the Cancer Imaging Archive REST API

A wrapper for The Cancer Imaging Archive's REST API. The Cancer Imaging Archive (TCIA) hosts de-identified medical images of cancer available for public download, as well as rich metadata for each image series. TCIA provides a REST API for programmatic access to the data. This package provides simple functions to access each API endpoint. For more information, see <https://github.com/pamelarussell/TCIApathfinder> and TCIA's website.

Authors:Pamela Russell [aut, cre]

TCIApathfinder_1.0.7.tar.gz
TCIApathfinder_1.0.7.zip(r-4.7-any)TCIApathfinder_1.0.7.zip(r-4.6-any)TCIApathfinder_1.0.7.zip(r-4.5-any)
TCIApathfinder_1.0.7.tgz(r-4.6-any)TCIApathfinder_1.0.7.tgz(r-4.5-any)
TCIApathfinder_1.0.7.tar.gz(r-4.7-any)TCIApathfinder_1.0.7.tar.gz(r-4.6-any)
TCIApathfinder_1.0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TCIApathfinder/json (API)

# Install 'TCIApathfinder' in R:
install.packages('TCIApathfinder', repos = c('https://pamelarussell.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pamelarussell/tciapathfinder/issues

On CRAN:

Conda:

tcia-dac

5.77 score 9 stars 33 scripts 298 downloads 1 mentions 18 exports 8 dependencies

Last updated from:3b73302e19. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE113
source / vignettesOK198
linux-releaseNOTE112
macos-releaseNOTE158
macos-oldrelNOTE180
windows-develNOTE63
windows-releaseNOTE69
windows-oldrelNOTE76
wasm-releaseOK100

Exports:extract_image_seriesget_body_part_namesget_collection_namesget_manufacturer_namesget_modality_namesget_new_patients_in_collectionget_new_studies_in_collectionget_patient_infoget_patient_studiesget_patients_by_modalityget_series_infoget_series_sizeget_sop_instance_uidsget_studies_in_collectionread_tciasave_extracted_image_seriessave_image_seriessave_single_image

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sys

Introduction to TCIApathfinder
Installation | Authentication | Usage | Load the package: | Get the names of all TCIA collections: | Get the names of all imaging modalities | Get the names of all body parts studied: | Get information for all patients in a collection | Get all image series based on criteria | Get detailed information on all imaging studies for a patient | Get all imaging studies for a collection | Get individual DICOM image IDs for an image series | Download a single DICOM image | Download an image series and extract it | Download, save and extract an image series, optionally to a temporary location | Additional functions
Rendered fromintroduction.Rmdusingknitr::rmarkdown

Last update: 2019-03-20
Started: 2017-09-07

TCIApathfinder and downstream analysis
Use TCIApathfinder to download and extract an image series | Use the "oro.dicom" package to load the image series | Download genomic data for this patient from The Cancer Genome Atlas
Rendered fromradiomics.Rmdusingknitr::rmarkdown

Last update: 2019-02-22
Started: 2017-09-07