{
  "_id": "6ac75099de46216d5edce453",
  "Package": "TCIApathfinder",
  "Title": "Client for the Cancer Imaging Archive REST API",
  "Version": "1.0.7",
  "Authors@R": "person(\"Pamela\", \"Russell\", email = \"pamela.russell@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "A wrapper for The Cancer Imaging Archive's REST API. The\nCancer Imaging Archive (TCIA) hosts de-identified medical\nimages of cancer available for public download, as well as rich\nmetadata for each image series. TCIA provides a REST API for\nprogrammatic access to the data. This package provides simple\nfunctions to access each API endpoint. For more information,\nsee <https://github.com/pamelarussell/TCIApathfinder> and\nTCIA's website.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "BugReports": "https://github.com/pamelarussell/TCIApathfinder/issues",
  "URL": "https://github.com/pamelarussell/TCIApathfinder",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://pamelarussell.r-universe.dev",
  "Date/Publication": "2021-02-04 21:49:19 UTC",
  "RemoteUrl": "https://github.com/pamelarussell/tciapathfinder",
  "RemoteRef": "HEAD",
  "RemoteSha": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-08 08:09:25 UTC",
    "User": "root"
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  "Author": "Pamela Russell [aut, cre]",
  "Maintainer": "Pamela Russell <pamela.russell@gmail.com>",
  "_user": "pamelarussell",
  "_type": "src",
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  "_created": "2026-10-08T08:09:25.000Z",
  "_published": "2026-10-08T08:13:13.272Z",
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  "_host": "GitHub-Actions",
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    "author": "Pamela Russell <pamela.russell@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #6 from muschellij2/master\n\nupdated DESCRIPTION - also new roxygen2",
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    "name": "Pamela Russell",
    "email": "pamela.russell@gmail.com",
    "login": "pamelarussell",
    "description": "Bioinformatician and Software Engineer",
    "uuid": 3533257
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  "_dependencies": [
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    {
      "package": "knitr",
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    },
    {
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    },
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      "package": "oro.dicom",
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  "_owner": "pamelarussell",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
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  ],
  "_stars": 9,
  "_contributors": [
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      "count": 56,
      "uuid": 3533257
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    "type": "user",
    "name": "Pamela Russell",
    "followers": 27,
    "description": "Bioinformatician and Software Engineer"
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    "count": 298,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TCIApathfinder"
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  "_mentions": 1,
  "_devurl": "https://github.com/pamelarussell/tciapathfinder",
  "_searchresults": 33,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TCIApathfinder.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/pamelarussell/tciapathfinder",
  "_realowner": "pamelarussell",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-08-20"
    },
    {
      "version": "1.0.1",
      "date": "2017-09-11"
    },
    {
      "version": "1.0.2",
      "date": "2018-01-24"
    },
    {
      "version": "1.0.3",
      "date": "2019-02-19"
    },
    {
      "version": "1.0.4",
      "date": "2019-04-08"
    },
    {
      "version": "1.0.5",
      "date": "2019-04-16"
    },
    {
      "version": "1.0.6",
      "date": "2019-09-21"
    }
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  "_exports": [
    "extract_image_series",
    "get_body_part_names",
    "get_collection_names",
    "get_manufacturer_names",
    "get_modality_names",
    "get_new_patients_in_collection",
    "get_new_studies_in_collection",
    "get_patient_info",
    "get_patient_studies",
    "get_patients_by_modality",
    "get_series_info",
    "get_series_size",
    "get_sop_instance_uids",
    "get_studies_in_collection",
    "read_tcia",
    "save_extracted_image_series",
    "save_image_series",
    "save_single_image"
  ],
  "_help": [
    {
      "page": "get_body_part_names",
      "title": "Get body part names",
      "topics": [
        "get_body_part_names"
      ]
    },
    {
      "page": "get_collection_names",
      "title": "Get the names of all TCIA collections",
      "topics": [
        "get_collection_names"
      ]
    },
    {
      "page": "get_manufacturer_names",
      "title": "Get manufacturer names",
      "topics": [
        "get_manufacturer_names"
      ]
    },
    {
      "page": "get_modality_names",
      "title": "Get modality names",
      "topics": [
        "get_modality_names"
      ]
    },
    {
      "page": "get_new_patients_in_collection",
      "title": "Get IDs of patients that have been added to a collection since a specified date",
      "topics": [
        "get_new_patients_in_collection"
      ]
    },
    {
      "page": "get_new_studies_in_collection",
      "title": "Get studies that have been added to a collection and optionally to a patient since a specified date",
      "topics": [
        "get_new_studies_in_collection"
      ]
    },
    {
      "page": "get_patient_info",
      "title": "Get patient information",
      "topics": [
        "get_patient_info"
      ]
    },
    {
      "page": "get_patient_studies",
      "title": "Get patient study information",
      "topics": [
        "get_patient_studies"
      ]
    },
    {
      "page": "get_patients_by_modality",
      "title": "Get patient IDs given a collection name and modality",
      "topics": [
        "get_patients_by_modality"
      ]
    },
    {
      "page": "get_series_info",
      "title": "Get image series information",
      "topics": [
        "get_series_info"
      ]
    },
    {
      "page": "get_series_size",
      "title": "Get size of image series",
      "topics": [
        "get_series_size"
      ]
    },
    {
      "page": "get_sop_instance_uids",
      "title": "Get SOP instance UIDs (individual DICOM image IDs) for an image series",
      "topics": [
        "get_sop_instance_uids"
      ]
    },
    {
      "page": "get_studies_in_collection",
      "title": "Get studies in a collection and optionally for a specific patient",
      "topics": [
        "get_studies_in_collection"
      ]
    },
    {
      "page": "read_tcia",
      "title": "Read TCIA file",
      "topics": [
        "read_tcia"
      ]
    },
    {
      "page": "save_extracted_image_series",
      "title": "Save a series of DICOM image files to a directory",
      "topics": [
        "extract_image_series",
        "save_extracted_image_series"
      ]
    },
    {
      "page": "save_image_series",
      "title": "Save a series of DICOM image files as a zip file",
      "topics": [
        "save_image_series"
      ]
    },
    {
      "page": "save_single_image",
      "title": "Save a single DICOM image file",
      "topics": [
        "save_single_image"
      ]
    }
  ],
  "_readme": "https://github.com/pamelarussell/tciapathfinder/raw/HEAD/README.md",
  "_rundeps": [
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    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
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    {
      "source": "introduction.Rmd",
      "filename": "introduction.html",
      "title": "Introduction to TCIApathfinder",
      "author": "Pamela Russell",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Authentication",
        "Usage",
        "Load the package:",
        "Get the names of all TCIA collections:",
        "Get the names of all imaging modalities",
        "Get the names of all body parts studied:",
        "Get information for all patients in a collection",
        "Get all image series based on criteria",
        "Get detailed information on all imaging studies for a patient",
        "Get all imaging studies for a collection",
        "Get individual DICOM image IDs for an image series",
        "Download a single DICOM image",
        "Download an image series and extract it",
        "Download, save and extract an image series, optionally to a temporary location",
        "Additional functions"
      ],
      "created": "2017-09-07 22:31:06",
      "modified": "2019-03-20 20:05:55",
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    {
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      "title": "TCIApathfinder and downstream analysis",
      "author": "Pamela Russell",
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      "headings": [
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        "Use the \"oro.dicom\" package to load the image series",
        "Download genomic data for this patient from The Cancer Genome Atlas"
      ],
      "created": "2017-09-07 22:31:06",
      "modified": "2019-02-22 18:41:37",
      "commits": 4
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  "_indexed": true,
  "_nocasepkg": "tciapathfinder",
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