{
  "_id": "6a213639cd65a98ecbd26890",
  "Package": "TCIApathfinder",
  "Title": "Client for the Cancer Imaging Archive REST API",
  "Version": "1.0.7",
  "Authors@R": "person(\"Pamela\", \"Russell\", email = \"pamela.russell@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "A wrapper for The Cancer Imaging Archive's REST API. The\nCancer Imaging Archive (TCIA) hosts de-identified medical\nimages of cancer available for public download, as well as rich\nmetadata for each image series. TCIA provides a REST API for\nprogrammatic access to the data. This package provides simple\nfunctions to access each API endpoint. For more information,\nsee <https://github.com/pamelarussell/TCIApathfinder> and\nTCIA's website.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "BugReports": "https://github.com/pamelarussell/TCIApathfinder/issues",
  "URL": "https://github.com/pamelarussell/TCIApathfinder",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://pamelarussell.r-universe.dev",
  "Date/Publication": "2021-02-04 21:49:19 UTC",
  "RemoteUrl": "https://github.com/pamelarussell/tciapathfinder",
  "RemoteRef": "HEAD",
  "RemoteSha": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 08:21:25 UTC",
    "User": "root"
  },
  "Author": "Pamela Russell [aut, cre]",
  "Maintainer": "Pamela Russell <pamela.russell@gmail.com>",
  "MD5sum": "04707941e18c6eb15e4873b5cd315e1a",
  "_user": "pamelarussell",
  "_type": "src",
  "_file": "TCIApathfinder_1.0.7.tar.gz",
  "_fileid": "7762848c8a619d3a5ef08f5e9dae4b51f4e2d1adde1a439e78d71151d51bc43f",
  "_filesize": 148544,
  "_sha256": "7762848c8a619d3a5ef08f5e9dae4b51f4e2d1adde1a439e78d71151d51bc43f",
  "_created": "2026-06-04T08:21:25.000Z",
  "_published": "2026-06-04T08:24:25.875Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79478693240,
      "time": 121,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7406534613"
    },
    {
      "job": 79478693214,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7406534777"
    },
    {
      "job": 79478693238,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7406535954"
    },
    {
      "job": 79478693218,
      "time": 148,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7406535301"
    },
    {
      "job": 79478160213,
      "time": 201,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406494740"
    },
    {
      "job": 79478693216,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406529642"
    },
    {
      "job": 79478693230,
      "time": 95,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7406527150"
    },
    {
      "job": 79478693222,
      "time": 91,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7406524975"
    },
    {
      "job": 79478693274,
      "time": 96,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7406526628"
    }
  ],
  "_buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/pamelarussell/tciapathfinder",
  "_commit": {
    "id": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
    "author": "Pamela Russell <pamela.russell@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #6 from muschellij2/master\n\nupdated DESCRIPTION - also new roxygen2",
    "time": 1612475359
  },
  "_maintainer": {
    "name": "Pamela Russell",
    "email": "pamela.russell@gmail.com",
    "login": "pamelarussell",
    "description": "Bioinformatician and Software Engineer",
    "uuid": 3533257
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "oro.dicom",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "pamelarussell",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "tcia-dac"
  ],
  "_stars": 9,
  "_contributors": [
    {
      "user": "pamelarussell",
      "count": 56,
      "uuid": 3533257
    },
    {
      "user": "muschellij2",
      "count": 13,
      "uuid": 1075118
    },
    {
      "user": "notzaki",
      "count": 1,
      "uuid": 9019681
    }
  ],
  "_userbio": {
    "uuid": 3533257,
    "type": "user",
    "name": "Pamela Russell",
    "description": "Bioinformatician and Software Engineer"
  },
  "_downloads": {
    "count": 137,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TCIApathfinder"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/pamelarussell/tciapathfinder",
  "_searchresults": 30,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TCIApathfinder.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/pamelarussell/tciapathfinder",
  "_realowner": "pamelarussell",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-08-20"
    },
    {
      "version": "1.0.1",
      "date": "2017-09-11"
    },
    {
      "version": "1.0.2",
      "date": "2018-01-24"
    },
    {
      "version": "1.0.3",
      "date": "2019-02-19"
    },
    {
      "version": "1.0.4",
      "date": "2019-04-08"
    },
    {
      "version": "1.0.5",
      "date": "2019-04-16"
    },
    {
      "version": "1.0.6",
      "date": "2019-09-21"
    }
  ],
  "_exports": [
    "extract_image_series",
    "get_body_part_names",
    "get_collection_names",
    "get_manufacturer_names",
    "get_modality_names",
    "get_new_patients_in_collection",
    "get_new_studies_in_collection",
    "get_patient_info",
    "get_patient_studies",
    "get_patients_by_modality",
    "get_series_info",
    "get_series_size",
    "get_sop_instance_uids",
    "get_studies_in_collection",
    "read_tcia",
    "save_extracted_image_series",
    "save_image_series",
    "save_single_image"
  ],
  "_help": [
    {
      "page": "get_body_part_names",
      "title": "Get body part names",
      "topics": [
        "get_body_part_names"
      ]
    },
    {
      "page": "get_collection_names",
      "title": "Get the names of all TCIA collections",
      "topics": [
        "get_collection_names"
      ]
    },
    {
      "page": "get_manufacturer_names",
      "title": "Get manufacturer names",
      "topics": [
        "get_manufacturer_names"
      ]
    },
    {
      "page": "get_modality_names",
      "title": "Get modality names",
      "topics": [
        "get_modality_names"
      ]
    },
    {
      "page": "get_new_patients_in_collection",
      "title": "Get IDs of patients that have been added to a collection since a specified date",
      "topics": [
        "get_new_patients_in_collection"
      ]
    },
    {
      "page": "get_new_studies_in_collection",
      "title": "Get studies that have been added to a collection and optionally to a patient since a specified date",
      "topics": [
        "get_new_studies_in_collection"
      ]
    },
    {
      "page": "get_patient_info",
      "title": "Get patient information",
      "topics": [
        "get_patient_info"
      ]
    },
    {
      "page": "get_patient_studies",
      "title": "Get patient study information",
      "topics": [
        "get_patient_studies"
      ]
    },
    {
      "page": "get_patients_by_modality",
      "title": "Get patient IDs given a collection name and modality",
      "topics": [
        "get_patients_by_modality"
      ]
    },
    {
      "page": "get_series_info",
      "title": "Get image series information",
      "topics": [
        "get_series_info"
      ]
    },
    {
      "page": "get_series_size",
      "title": "Get size of image series",
      "topics": [
        "get_series_size"
      ]
    },
    {
      "page": "get_sop_instance_uids",
      "title": "Get SOP instance UIDs (individual DICOM image IDs) for an image series",
      "topics": [
        "get_sop_instance_uids"
      ]
    },
    {
      "page": "get_studies_in_collection",
      "title": "Get studies in a collection and optionally for a specific patient",
      "topics": [
        "get_studies_in_collection"
      ]
    },
    {
      "page": "read_tcia",
      "title": "Read TCIA file",
      "topics": [
        "read_tcia"
      ]
    },
    {
      "page": "save_extracted_image_series",
      "title": "Save a series of DICOM image files to a directory",
      "topics": [
        "extract_image_series",
        "save_extracted_image_series"
      ]
    },
    {
      "page": "save_image_series",
      "title": "Save a series of DICOM image files as a zip file",
      "topics": [
        "save_image_series"
      ]
    },
    {
      "page": "save_single_image",
      "title": "Save a single DICOM image file",
      "topics": [
        "save_single_image"
      ]
    }
  ],
  "_readme": "https://github.com/pamelarussell/tciapathfinder/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_vignettes": [
    {
      "source": "introduction.Rmd",
      "filename": "introduction.html",
      "title": "Introduction to TCIApathfinder",
      "author": "Pamela Russell",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Authentication",
        "Usage",
        "Load the package:",
        "Get the names of all TCIA collections:",
        "Get the names of all imaging modalities",
        "Get the names of all body parts studied:",
        "Get information for all patients in a collection",
        "Get all image series based on criteria",
        "Get detailed information on all imaging studies for a patient",
        "Get all imaging studies for a collection",
        "Get individual DICOM image IDs for an image series",
        "Download a single DICOM image",
        "Download an image series and extract it",
        "Download, save and extract an image series, optionally to a temporary location",
        "Additional functions"
      ],
      "created": "2017-09-07 22:31:06",
      "modified": "2019-03-20 20:05:55",
      "commits": 5
    },
    {
      "source": "radiomics.Rmd",
      "filename": "radiomics.html",
      "title": "TCIApathfinder and downstream analysis",
      "author": "Pamela Russell",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Use TCIApathfinder to download and extract an image series",
        "Use the \"oro.dicom\" package to load the image series",
        "Download genomic data for this patient from The Cancer Genome Atlas"
      ],
      "created": "2017-09-07 22:31:06",
      "modified": "2019-02-22 18:41:37",
      "commits": 4
    }
  ],
  "_score": 5.732393759822968,
  "_indexed": true,
  "_nocasepkg": "tciapathfinder",
  "_universes": [
    "pamelarussell"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:32.000Z",
      "distro": "noble",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "b08dcada696b5c5dac9faa896cf173bf9069e063d75829c39eb4b2e18428c35a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:32.000Z",
      "distro": "noble",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "7f5d73181acaa73145e62734d23f5902c9a743155a77ae92eed85d27e64848b5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:39.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "ac14f18ecd77af31ab805327704f018fbf69928e46472a80b91c4a20177a5578",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:35.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "47726aea07bd264ab9adfbd0df4d3f14e8b4c71aefdb0a28b8b2f918d584f70c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:28.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "2518b36075da34411d2b9ea6534c61e868f381bdd5c91145b9a5040fb3947c7f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-04T08:23:04.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "bfe15d85da8500367e672bc6d318a00ecb4b7a3bd7af647e8eb33b5e9b32b5e6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-04T08:22:56.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "6664011a5c50d4b92cdf2321d5c357fcd22bef6d76113b23d1580d53aca42f91",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-04T08:22:55.000Z",
      "commit": "3b73302e192a5650237ac9fda16c3ab4dcc99b48",
      "fileid": "14f169cdcd993c67cae8fa6576ede713cedce861acc0cd3d88dd1e74f4558077",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pamelarussell/actions/runs/26939765353"
    }
  ]
}