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Introduction to TCIApathfinder8 years ago
Installation | Authentication | Usage | Load the package: | Get the names of all TCIA collections: | Get the names of all imaging modalities | Get the names of all body parts studied: | Get information for all patients in a collection | Get all image series based on criteria | Get detailed information on all imaging studies for a patient | Get all imaging studies for a collection | Get individual DICOM image IDs for an image series | Download a single DICOM image | Download an image series and extract it | Download, save and extract an image series, optionally to a temporary location | Additional functions
TCIApathfinder and downstream analysis8 years ago
Use TCIApathfinder to download and extract an image series | Use the "oro.dicom" package to load the image series | Download genomic data for this patient from The Cancer Genome Atlas